Software List
The software in the list below is developed and maintained at LIACS or has significant contributions from LIACS.
| Name | Links | LIACS contact(s) | Short description | RSE Support |
|---|---|---|---|---|
| Cortana → SubDisc | Webpage, GitHub | Arno Knobbe | Cortana is a Data Mining tool for discovering local patterns in data. | Collaborating |
| Sport Data Valley | Website , Gitlab | Arno Knobbe, Auke Damstra (manager) | Collect data about training and sports | |
| OpenML | Website, Github | Jan van Rijn | OpenML is an online machine learning platform for sharing and organizing data, machine learning algorithms and experiments. | Collaborating |
| IOHProfiler | Website, Github | Thomas Bäck, email | IOHprofiler is a benchmarking platform for evaluating the performance of iterative optimization heuristics. | Consulting |
| Sparkle | Webpage, Bitbucket | Koen van der Blom, Holger Hoos | Sparkle is a problem-solving platform designed to enable the wide-spread and effective use of programming by optimisation (PbO) techniques. | Collaborating |
| Hedy | Website, Github | Felienne Hermans | Hedy is a gradual programming language aimed at teaching programming and teaching Python. | Collaborating |
| Daedalus | Website | Todor Stefanov | Daedalus provides a single environment for rapid system-level architectural exploration, high-level synthesis, programming and prototyping of multimedia MP-SoC architectures. | |
| TDR-3Dbase | Webpage | Fons Verbeek | With TDR-3dbase you can generate a 3D reconstruction from a series of aligned section images. | |
| Incremental closeness centrality computation | Webpage, Bitbucket (private) | Frank Takes | Incremental closeness centrality computation | |
| Multilayer network motif counting | Webpage, Bitbucket | Frank Takes | Code to be included in the Stanford Network Analysis Platform (SNAP) in order to be able to count multilayer temporal motifs. | |
| CADA | Webpage, | Github | Frank Takes | Code for detecting node anomalies in networks with NetworkX. | |
| GPUGraphLayout | Webpage, Github | Frank Takes, Kristian Rietveld | Code for large scale graph layout using the GPU | |
| Multiplex network motif enumeration | Webpage, Source (tar file) | Frank Takes | Detecting Motifs in Multiplex Corporate Networks | |
| teexGraph | Webpage, Github | Frank Takes | C++ library for large-scale network analysis and computation | |
| Structural RNA homology search (SRHS) | Website (frontend), Github | Fons Verbeek | SRHS is a multithreaded C application for searching viral RNA genomes based on the definition of Consensus Secondary Structure Descriptors. | |
| MycoDiversity Database | Website (frontend, backend) | Fons Verbeek, Irene Martorelli | The MycoDiversity DataBase (MDDB) is a dedicated database for facilitating retrieval of fungal metabarcoding data from public domains. | Consulting |
| Arise BioDiversity project Naturalis | Website | Fons Verbeek, Irene Martorelli, Vincent Merckx | The Arise BioDiversity project aims to develop an organized overview of all multicellular life in the Netherlands and the infrastructure to semi-automatically identify all these species. | Considering |
| Automatic reading of old palm leaf manuscripts | Erick Paulus | Recognition system to automatically process handwritten old Indonesian (West Java) manuscripts on Contor, Daluwang and other carriers. | ||
| Dementia project | Webpage | Matthijs van Leeuwen, Daniela Gawehns | Monitor daily activities of people with dementia and the relation of their health, quality of life and social cohesion in a local community. | Collaborating |
| SchoolYard project | Webpage | Carolien Rieffe, Mitra Baratchi, Maedeh Nasri | Monitor children at school yards with the purpose to improve their wellbeing with environment changes and interventions. | Collaborating |
| Data observatory SAILS project | Mitra Baratchi | Repository with datasets, models, benchmarks and algorithms for spatio-temporal AI problems collected from sensor projects. | Collaborating | |
| RightField | Website , Github | Katy Wolstencroft, Rohola Hosseini | RightField is an open-source tool for adding ontology term selection to Excel spreadsheets. | Collaborating |
| DSSD | Webpage | Matthijs van Leeuwen | C++ implementation of a variety of search methods and quality measures for subgroup discovery and exceptional model mining, including Diverse Subgroup Set Discovery. | |
| Linking UCD | Website | Wessel Kraaij, Ariadne Schmidt | Software architecture of linking city, university and diversity platform for city studies by historians supported by data science algorithms. | Collaborating |
RSE support
The support that the Research Software Engineers (RSE) could offer can take multiple forms. For now, we indicate the support offered in one of those categories:
| RSE Support | Description |
|---|---|
| Collaborating | We are collaborating in the development of the project. |
| Contributing | We are contributing to the project. |
| Consulting | We act as a resource to help choose technology, design software and overcome technical challenges. |
| Considering | We are currently evaluating if and the form that could take our implication. |
| On hold | We put our involvement on hold. |